Temporary header file '/tmp/RWPJcr32fo/dump1.h' with the following content will be compiled to create GCC translation unit dump: // add defines #define __STDC_VERSION__ 201710L #define _TIME_BITS 64 #define _FILE_OFFSET_BITS 64 #define _GXX_NULLPTR_T #define CLUTTER_ENABLE_COMPOSITOR_API 1 #define _REGEX_NELTS(n) #define _Atomic #define PACKED #define getaddrinfo_a(a,b,c,d) // add includes #include "/usr/include/squizz/align/clustal.h" #include "/usr/include/squizz/align/fasta2.h" #include "/usr/include/squizz/align/mega.h" #include "/usr/include/squizz/align/msf.h" #include "/usr/include/squizz/align/nexusi.h" #include "/usr/include/squizz/align/phylipi.h" #include "/usr/include/squizz/align/phylips.h" #include "/usr/include/squizz/align/stock.h" #include "/usr/include/squizz/align.h" #include "/usr/include/squizz/sequence/codata.h" #include "/usr/include/squizz/sequence/embl.h" #include "/usr/include/squizz/sequence/fasta.h" #include "/usr/include/squizz/sequence/gcg.h" #include "/usr/include/squizz/sequence/gde.h" #include "/usr/include/squizz/sequence/genbank.h" #include "/usr/include/squizz/sequence/ig.h" #include "/usr/include/squizz/sequence/nbrf.h" #include "/usr/include/squizz/sequence/raw.h" #include "/usr/include/squizz/sequence/sprot.h" #include "/usr/include/squizz/sequence.h" // add classes _G_fpos64_t* tmp_add_class_0; _G_fpos_t* tmp_add_class_1; _IO_cookie_io_functions_t* tmp_add_class_2; The GCC parameters: gcc -fdump-lang-raw -fkeep-inline-functions -c -x c++ -fpermissive -w "/tmp/RWPJcr32fo/dump1.h" -I/usr/include/squizz