Temporary header file '/tmp/3H39P69atp/dump1.h' with the following content will be compiled to create GCC translation unit dump: // add defines #define __STDC_VERSION__ 201710L #define _TIME_BITS 64 #define _FILE_OFFSET_BITS 64 #define _GXX_NULLPTR_T #define CLUTTER_ENABLE_COMPOSITOR_API 1 #define _REGEX_NELTS(n) #define _Atomic #define PACKED #define getaddrinfo_a(a,b,c,d) // add includes #include "/usr/include/smithwaterman/BandedSmithWaterman.h" #include "/usr/include/smithwaterman/IndelAllele.h" #include "/usr/include/smithwaterman/LeftAlign.h" #include "/usr/include/smithwaterman/Mosaik.h" #include "/usr/include/smithwaterman/Repeats.h" #include "/usr/include/smithwaterman/SmithWatermanGotoh.h" #include "/usr/include/smithwaterman/convert.h" // add classes CBandedSmithWaterman* tmp_add_class_0; CSmithWatermanGotoh* tmp_add_class_1; ElementInfo* tmp_add_class_2; IndelAllele* tmp_add_class_3; _G_fpos64_t* tmp_add_class_4; _G_fpos_t* tmp_add_class_5; _IO_cookie_io_functions_t* tmp_add_class_6; The GCC parameters: gcc -fdump-lang-raw -fkeep-inline-functions -c -x c++ -fpermissive -w "/tmp/3H39P69atp/dump1.h"