Temporary header file '/tmp/JNChw1PMiy/dump1.h' with the following content will be compiled to create GCC translation unit dump: // add defines #define __STDC_VERSION__ 201710L #define _FILE_OFFSET_BITS 64 #define _GXX_NULLPTR_T #define CLUTTER_ENABLE_COMPOSITOR_API 1 #define _REGEX_NELTS(n) #define _Atomic #define PACKED #ifdef __cplusplus // C17 compat layer #define _Alignof(type) alignof(type) #endif #define getaddrinfo_a(a,b,c,d) // add includes #include "/usr/include/c++/12/ostream" #include "/usr/include/jellyfish/allocators_mmap.hpp" #include "/usr/include/jellyfish/atomic_bits_array.hpp" #include "/usr/include/jellyfish/atomic_field.hpp" #include "/usr/include/jellyfish/atomic_gcc.hpp" #include "/usr/include/jellyfish/backtrace.hpp" #include "/usr/include/jellyfish/binary_dumper.hpp" #include "/usr/include/jellyfish/bloom_common.hpp" #include "/usr/include/jellyfish/bloom_counter2.hpp" #include "/usr/include/jellyfish/bloom_filter.hpp" #include "/usr/include/jellyfish/circular_buffer.hpp" #include "/usr/include/jellyfish/compare_and_swap.hpp" #include "/usr/include/jellyfish/config.h" #include "/usr/include/jellyfish/cooperative_pool.hpp" #include "/usr/include/jellyfish/cooperative_pool2.hpp" #include "/usr/include/jellyfish/cpp_array.hpp" #include "/usr/include/jellyfish/divisor.hpp" #include "/usr/include/jellyfish/dumper.hpp" #include "/usr/include/jellyfish/err.hpp" #include "/usr/include/jellyfish/file_header.hpp" #include "/usr/include/jellyfish/generator_manager.hpp" #include "/usr/include/jellyfish/generic_file_header.hpp" #include "/usr/include/jellyfish/hash_counter.hpp" #include "/usr/include/jellyfish/jellyfish.hpp" #include "/usr/include/jellyfish/json.h" #include "/usr/include/jellyfish/large_hash_array.hpp" #include "/usr/include/jellyfish/large_hash_iterator.hpp" #include "/usr/include/jellyfish/locks_pthread.hpp" #include "/usr/include/jellyfish/mapped_file.hpp" #include "/usr/include/jellyfish/mer_dna.hpp" #include "/usr/include/jellyfish/mer_dna_bloom_counter.hpp" #include "/usr/include/jellyfish/mer_heap.hpp" #include "/usr/include/jellyfish/mer_iterator.hpp" #include "/usr/include/jellyfish/mer_overlap_sequence_parser.hpp" #include "/usr/include/jellyfish/mer_qual_iterator.hpp" #include "/usr/include/jellyfish/misc.hpp" #include "/usr/include/jellyfish/offsets_key_value.hpp" #include "/usr/include/jellyfish/parser_common.hpp" #include "/usr/include/jellyfish/rectangular_binary_matrix.hpp" #include "/usr/include/jellyfish/sam_format.hpp" #include "/usr/include/jellyfish/simple_circular_buffer.hpp" #include "/usr/include/jellyfish/sorted_dumper.hpp" #include "/usr/include/jellyfish/stdio_filebuf.hpp" #include "/usr/include/jellyfish/storage.hpp" #include "/usr/include/jellyfish/stream_iterator.hpp" #include "/usr/include/jellyfish/stream_manager.hpp" #include "/usr/include/jellyfish/text_dumper.hpp" #include "/usr/include/jellyfish/thread_exec.hpp" #include "/usr/include/jellyfish/time.hpp" #include "/usr/include/jellyfish/token_ring.hpp" #include "/usr/include/jellyfish/whole_sequence_parser.hpp" // add namespaces namespace allocators{typedef int tmp_add_type_1;} allocators::tmp_add_type_1 tmp_add_func_1(){return 0;}; namespace atomic{typedef int tmp_add_type_2;} atomic::tmp_add_type_2 tmp_add_func_2(){return 0;}; namespace jellyfish{typedef int tmp_add_type_3;} jellyfish::tmp_add_type_3 tmp_add_func_3(){return 0;}; namespace jellyfish{namespace cooperative{typedef int tmp_add_type_4;}} jellyfish::cooperative::tmp_add_type_4 tmp_add_func_4(){return 0;}; namespace jellyfish{namespace err{typedef int tmp_add_type_5;}} jellyfish::err::tmp_add_type_5 tmp_add_func_5(){return 0;}; namespace jellyfish{namespace locks{typedef int tmp_add_type_6;}} jellyfish::locks::tmp_add_type_6 tmp_add_func_6(){return 0;}; namespace jellyfish{namespace locks{namespace pthread{typedef int tmp_add_type_7;}}} jellyfish::locks::pthread::tmp_add_type_7 tmp_add_func_7(){return 0;}; namespace jflib{typedef int tmp_add_type_8;} jflib::tmp_add_type_8 tmp_add_func_8(){return 0;}; namespace Json{typedef int tmp_add_type_9;} Json::tmp_add_type_9 tmp_add_func_9(){return 0;}; namespace jellyfish{namespace large_hash{typedef int tmp_add_type_10;}} jellyfish::large_hash::tmp_add_type_10 tmp_add_func_10(){return 0;}; namespace jellyfish{namespace mer_dna_ns{typedef int tmp_add_type_11;}} jellyfish::mer_dna_ns::tmp_add_type_11 tmp_add_func_11(){return 0;}; namespace jellyfish{namespace mer_heap{typedef int tmp_add_type_12;}} jellyfish::mer_heap::tmp_add_type_12 tmp_add_func_12(){return 0;}; namespace jellyfish{namespace simple_circular_buffer{typedef int tmp_add_type_13;}} jellyfish::simple_circular_buffer::tmp_add_type_13 tmp_add_func_13(){return 0;}; // add classes Time* tmp_add_class_0; _G_fpos64_t* tmp_add_class_1; _G_fpos_t* tmp_add_class_2; _IO_cookie_io_functions_t* tmp_add_class_3; bam1_core_t* tmp_add_class_4; bam1_t* tmp_add_class_5; bam_pileup1_t* tmp_add_class_6; f_owner_ex* tmp_add_class_7; file_handle* tmp_add_class_8; flock64* tmp_add_class_9; htsFile* tmp_add_class_10; htsFormat* tmp_add_class_11; htsThreadPool* tmp_add_class_12; hts_base_mod* tmp_add_class_13; hts_itr_t* tmp_add_class_14; hts_opt* tmp_add_class_15; hts_pair64_max_t* tmp_add_class_16; hts_pair64_t* tmp_add_class_17; hts_pair_pos_t* tmp_add_class_18; hts_reglist_t* tmp_add_class_19; iovec* tmp_add_class_20; itimerval* tmp_add_class_21; ks_tokaux_t* tmp_add_class_22; kstring_t* tmp_add_class_23; probaln_par_t* tmp_add_class_24; sam_hdr_t* tmp_add_class_25; statx_timestamp* tmp_add_class_26; ucontext_t* tmp_add_class_27; utsname* tmp_add_class_28; The GCC parameters: gcc -fdump-lang-raw -fkeep-inline-functions -c -x c++ -fpermissive -w "/tmp/JNChw1PMiy/dump1.h" -I/usr/include/jellyfish