Temporary header file '/tmp/FqyVQzzBGI/dump1.h' with the following content will be compiled to create GCC translation unit dump: // add defines #define __STDC_VERSION__ 201710L #define _TIME_BITS 64 #define _FILE_OFFSET_BITS 64 #define _GXX_NULLPTR_T #define CLUTTER_ENABLE_COMPOSITOR_API 1 #define _REGEX_NELTS(n) #define _Atomic #define PACKED #ifdef __cplusplus // C17 compat layer #define _Alignof(type) alignof(type) #endif #define getaddrinfo_a(a,b,c,d) // add includes #include "/usr/include/Bpp/Phyl/AncestralStateReconstruction.h" #include "/usr/include/Bpp/Phyl/App/PhylogeneticsApplicationTools.h" #include "/usr/include/Bpp/Phyl/BipartitionList.h" #include "/usr/include/Bpp/Phyl/BipartitionTools.h" #include "/usr/include/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h" #include "/usr/include/Bpp/Phyl/Distance/BioNJ.h" #include "/usr/include/Bpp/Phyl/Distance/DistanceEstimation.h" #include "/usr/include/Bpp/Phyl/Distance/DistanceMethod.h" #include "/usr/include/Bpp/Phyl/Distance/HierarchicalClustering.h" #include "/usr/include/Bpp/Phyl/Distance/NeighborJoining.h" #include "/usr/include/Bpp/Phyl/Distance/PGMA.h" #include "/usr/include/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h" #include "/usr/include/Bpp/Phyl/Graphics/AbstractTreeDrawing.h" #include "/usr/include/Bpp/Phyl/Graphics/CladogramPlot.h" #include "/usr/include/Bpp/Phyl/Graphics/PhylogramPlot.h" #include "/usr/include/Bpp/Phyl/Graphics/TreeDrawing.h" #include "/usr/include/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h" #include "/usr/include/Bpp/Phyl/Graphics/TreeDrawingListener.h" #include "/usr/include/Bpp/Phyl/Io/BppOFrequenciesSetFormat.h" #include "/usr/include/Bpp/Phyl/Io/BppOMultiTreeReaderFormat.h" #include "/usr/include/Bpp/Phyl/Io/BppOMultiTreeWriterFormat.h" #include "/usr/include/Bpp/Phyl/Io/BppORateDistributionFormat.h" #include "/usr/include/Bpp/Phyl/Io/BppOSubstitutionModelFormat.h" #include "/usr/include/Bpp/Phyl/Io/BppOTransitionModelFormat.h" #include "/usr/include/Bpp/Phyl/Io/BppOTreeReaderFormat.h" #include "/usr/include/Bpp/Phyl/Io/BppOTreeWriterFormat.h" #include "/usr/include/Bpp/Phyl/Io/IoDistanceMatrix.h" #include "/usr/include/Bpp/Phyl/Io/IoDistanceMatrixFactory.h" #include "/usr/include/Bpp/Phyl/Io/IoFrequenciesSet.h" #include "/usr/include/Bpp/Phyl/Io/IoFrequenciesSetFactory.h" #include "/usr/include/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h" #include "/usr/include/Bpp/Phyl/Io/IoSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Io/IoSubstitutionModelFactory.h" #include "/usr/include/Bpp/Phyl/Io/IoTree.h" #include "/usr/include/Bpp/Phyl/Io/IoTreeFactory.h" #include "/usr/include/Bpp/Phyl/Io/Newick.h" #include "/usr/include/Bpp/Phyl/Io/NexusIoTree.h" #include "/usr/include/Bpp/Phyl/Io/Nhx.h" #include "/usr/include/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h" #include "/usr/include/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h" #include "/usr/include/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h" #include "/usr/include/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h" #include "/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h" #include "/usr/include/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h" #include "/usr/include/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h" #include "/usr/include/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h" #include "/usr/include/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.h" #include "/usr/include/Bpp/Phyl/Likelihood/RASTools.h" #include "/usr/include/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/TreeLikelihood.h" #include "/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodData.h" #include "/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h" #include "/usr/include/Bpp/Phyl/Mapping/CategorySubstitutionRegister.h" #include "/usr/include/Bpp/Phyl/Mapping/DecompositionMethods.h" #include "/usr/include/Bpp/Phyl/Mapping/DecompositionReward.h" #include "/usr/include/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h" #include "/usr/include/Bpp/Phyl/Mapping/LaplaceSubstitutionCount.h" #include "/usr/include/Bpp/Phyl/Mapping/Mapping.h" #include "/usr/include/Bpp/Phyl/Mapping/NaiveSubstitutionCount.h" #include "/usr/include/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h" #include "/usr/include/Bpp/Phyl/Mapping/ProbabilisticRewardMapping.h" #include "/usr/include/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h" #include "/usr/include/Bpp/Phyl/Mapping/Reward.h" #include "/usr/include/Bpp/Phyl/Mapping/RewardMapping.h" #include "/usr/include/Bpp/Phyl/Mapping/RewardMappingTools.h" #include "/usr/include/Bpp/Phyl/Mapping/SubstitutionCount.h" #include "/usr/include/Bpp/Phyl/Mapping/SubstitutionMapping.h" #include "/usr/include/Bpp/Phyl/Mapping/SubstitutionMappingTools.h" #include "/usr/include/Bpp/Phyl/Mapping/SubstitutionRegister.h" #include "/usr/include/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h" #include "/usr/include/Bpp/Phyl/Mapping/WeightedSubstitutionCount.h" #include "/usr/include/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/AbstractFromSubstitutionModelTransitionModel.h" #include "/usr/include/Bpp/Phyl/Model/AbstractKroneckerWordSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/AbstractSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/AbstractWrappedModel.h" #include "/usr/include/Bpp/Phyl/Model/AnonymousSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/BinarySubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonAAFitnessSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonAARateSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonBGCSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonCpGSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonDistanceSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFitnessSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonFrequenciesSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonPhaseFrequenciesSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/AbstractCodonSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/AbstractKroneckerCodonSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/CodonAdHocSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceFrequenciesSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/CodonDistancePhaseFrequenciesSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/CodonDistanceSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/CodonSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/GY94.h" #include "/usr/include/Bpp/Phyl/Model/Codon/KCM.h" #include "/usr/include/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceFrequenciesSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/KroneckerCodonDistanceSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/MG94.h" #include "/usr/include/Bpp/Phyl/Model/Codon/SENCA.h" #include "/usr/include/Bpp/Phyl/Model/Codon/TripletSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Codon/YN98.h" #include "/usr/include/Bpp/Phyl/Model/Codon/YNGP_M.h" #include "/usr/include/Bpp/Phyl/Model/Codon/YNGP_M1.h" #include "/usr/include/Bpp/Phyl/Model/Codon/YNGP_M10.h" #include "/usr/include/Bpp/Phyl/Model/Codon/YNGP_M2.h" #include "/usr/include/Bpp/Phyl/Model/Codon/YNGP_M3.h" #include "/usr/include/Bpp/Phyl/Model/Codon/YNGP_M7.h" #include "/usr/include/Bpp/Phyl/Model/Codon/YNGP_M8.h" #include "/usr/include/Bpp/Phyl/Model/Codon/YNGP_M9.h" #include "/usr/include/Bpp/Phyl/Model/FrequenciesSet/CodonFrequenciesSet.h" #include "/usr/include/Bpp/Phyl/Model/FrequenciesSet/FrequenciesSet.h" #include "/usr/include/Bpp/Phyl/Model/FrequenciesSet/MvaFrequenciesSet.h" #include "/usr/include/Bpp/Phyl/Model/FrequenciesSet/NucleotideFrequenciesSet.h" #include "/usr/include/Bpp/Phyl/Model/FrequenciesSet/ProteinFrequenciesSet.h" #include "/usr/include/Bpp/Phyl/Model/FrequenciesSet/WordFrequenciesSet.h" #include "/usr/include/Bpp/Phyl/Model/FromMixtureSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/G2001.h" #include "/usr/include/Bpp/Phyl/Model/InMixedSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/KroneckerWordSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/MixedSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/MixedSubstitutionModelSet.h" #include "/usr/include/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h" #include "/usr/include/Bpp/Phyl/Model/Nucleotide/F84.h" #include "/usr/include/Bpp/Phyl/Model/Nucleotide/GTR.h" #include "/usr/include/Bpp/Phyl/Model/Nucleotide/HKY85.h" #include "/usr/include/Bpp/Phyl/Model/Nucleotide/JCnuc.h" #include "/usr/include/Bpp/Phyl/Model/Nucleotide/K80.h" #include "/usr/include/Bpp/Phyl/Model/Nucleotide/L95.h" #include "/usr/include/Bpp/Phyl/Model/Nucleotide/NucleotideSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Nucleotide/RN95.h" #include "/usr/include/Bpp/Phyl/Model/Nucleotide/RN95s.h" #include "/usr/include/Bpp/Phyl/Model/Nucleotide/SSR.h" #include "/usr/include/Bpp/Phyl/Model/Nucleotide/T92.h" #include "/usr/include/Bpp/Phyl/Model/Nucleotide/TN93.h" #include "/usr/include/Bpp/Phyl/Model/Nucleotide/YpR.h" #include "/usr/include/Bpp/Phyl/Model/Nucleotide/gBGC.h" #include "/usr/include/Bpp/Phyl/Model/OneChangeRegisterTransitionModel.h" #include "/usr/include/Bpp/Phyl/Model/OneChangeTransitionModel.h" #include "/usr/include/Bpp/Phyl/Model/Protein/Coala.h" #include "/usr/include/Bpp/Phyl/Model/Protein/CoalaCore.h" #include "/usr/include/Bpp/Phyl/Model/Protein/DSO78.h" #include "/usr/include/Bpp/Phyl/Model/Protein/JCprot.h" #include "/usr/include/Bpp/Phyl/Model/Protein/JTT92.h" #include "/usr/include/Bpp/Phyl/Model/Protein/LG08.h" #include "/usr/include/Bpp/Phyl/Model/Protein/LG10_EX_EHO.h" #include "/usr/include/Bpp/Phyl/Model/Protein/LGL08_CAT.h" #include "/usr/include/Bpp/Phyl/Model/Protein/LLG08_EHO.h" #include "/usr/include/Bpp/Phyl/Model/Protein/LLG08_EX2.h" #include "/usr/include/Bpp/Phyl/Model/Protein/LLG08_EX3.h" #include "/usr/include/Bpp/Phyl/Model/Protein/LLG08_UL2.h" #include "/usr/include/Bpp/Phyl/Model/Protein/LLG08_UL3.h" #include "/usr/include/Bpp/Phyl/Model/Protein/ProteinSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Protein/UserProteinSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/Protein/WAG01.h" #include "/usr/include/Bpp/Phyl/Model/RE08.h" #include "/usr/include/Bpp/Phyl/Model/RateDistribution/ConstantRateDistribution.h" #include "/usr/include/Bpp/Phyl/Model/RateDistribution/ExponentialDiscreteRateDistribution.h" #include "/usr/include/Bpp/Phyl/Model/RateDistribution/GammaDiscreteRateDistribution.h" #include "/usr/include/Bpp/Phyl/Model/RateDistribution/GaussianDiscreteRateDistribution.h" #include "/usr/include/Bpp/Phyl/Model/RegisterRatesSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/StateMap.h" #include "/usr/include/Bpp/Phyl/Model/SubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/SubstitutionModelSet.h" #include "/usr/include/Bpp/Phyl/Model/SubstitutionModelSetTools.h" #include "/usr/include/Bpp/Phyl/Model/TS98.h" #include "/usr/include/Bpp/Phyl/Model/WordSubstitutionModel.h" #include "/usr/include/Bpp/Phyl/Model/WrappedModel.h" #include "/usr/include/Bpp/Phyl/NNISearchable.h" #include "/usr/include/Bpp/Phyl/NNITopologySearch.h" #include "/usr/include/Bpp/Phyl/Node.h" #include "/usr/include/Bpp/Phyl/NodeTemplate.h" #include "/usr/include/Bpp/Phyl/OptimizationTools.h" #include "/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h" #include "/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h" #include "/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h" #include "/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h" #include "/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyData.h" #include "/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyScore.h" #include "/usr/include/Bpp/Phyl/PatternTools.h" #include "/usr/include/Bpp/Phyl/PhyloStatistics.h" #include "/usr/include/Bpp/Phyl/Simulation/DetailedSiteSimulator.h" #include "/usr/include/Bpp/Phyl/Simulation/HomogeneousSequenceSimulator.h" #include "/usr/include/Bpp/Phyl/Simulation/MutationProcess.h" #include "/usr/include/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h" #include "/usr/include/Bpp/Phyl/Simulation/SequenceSimulationTools.h" #include "/usr/include/Bpp/Phyl/Simulation/SequenceSimulator.h" #include "/usr/include/Bpp/Phyl/Simulation/SiteSimulator.h" #include "/usr/include/Bpp/Phyl/SitePatterns.h" #include "/usr/include/Bpp/Phyl/TopologySearch.h" #include "/usr/include/Bpp/Phyl/Tree.h" #include "/usr/include/Bpp/Phyl/TreeExceptions.h" #include "/usr/include/Bpp/Phyl/TreeTemplate.h" #include "/usr/include/Bpp/Phyl/TreeTemplateTools.h" #include "/usr/include/Bpp/Phyl/TreeTools.h" // add namespaces namespace bpp{typedef int tmp_add_type_1;} bpp::tmp_add_type_1 tmp_add_func_1(){return 0;}; namespace bpp{namespace TextTools{typedef int tmp_add_type_2;}} bpp::TextTools::tmp_add_type_2 tmp_add_func_2(){return 0;}; // add classes _G_fpos64_t* tmp_add_class_0; _G_fpos_t* tmp_add_class_1; _IO_cookie_io_functions_t* tmp_add_class_2; The GCC parameters: gcc -fdump-lang-raw -fkeep-inline-functions -c -x c++ -fpermissive -w "/tmp/FqyVQzzBGI/dump1.h"